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The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes

Published in:

Standards in Genomic Sciences 1(1) , 63-67 ( 2009)

Author(s):

Mavromatis, K., Ivanova, N. N., Chen, I. M. A., Szeto, E., Markowitz, V. M., Kyrpides, N. C.

DOI:

Doi 10.4056/Sigs.632

Abstract:

The DOE-JGI Microbial Annotation Pipeline (DOE-JGI MAP) supports gene prediction and/or functional annotation of microbial genomes towards comparative analysis with the Integrated Microbial Genome [1] (IMG) system. DOE-JGI MAP annotation is applied on nucleotide sequence datasets included in the IMG-ER (Expert Review) version of IMG via the IMG ER submission site. Users can submit the sequence datasets consisting of one or more contigs in a multi-fasta file. DOE-JGI MAP annotation includes prediction of protein coding and RNA genes, as well as repeats and assignment of product names to these genes.

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