Archive

  • Visit JGI.DOE.GOV
News & Publications
Home › Publications › Draft genome sequence of the cellulolytic endophyte Chitinophaga costaii A37T2T

Draft genome sequence of the cellulolytic endophyte Chitinophaga costaii A37T2T

Published in:

Stand Genomic Sci 12 , 53 (Sep 6 2017)

Author(s):

Proenca, D. N., Whitman, W. B., Shapiro, N., Woyke, T., Kyrpides, N. C., Morais, P. V.

DOI:

10.1186/s40793-017-0262-2

Abstract:

Here we report the draft genome sequence of Chitinophaga costai A37T2T (=CIP 110584T, =LMG 27458T), which was isolated from the endophytic community of Pinus pinaster tree. The total genome size of C. costaii A37T2T is 5.07 Mbp, containing 4204 coding sequences. Strain A37T2T encoded multiple genes likely involved in cellulolytic, chitinolytic and lipolytic activities. This genome showed 1145 unique genes assigned into 109 Cluster of Orthologous Groups in comparison with the complete genome of C. pinensis DSM 2588T. The genomic information suggests the potential of the strain A37T2T to interact with the plant metabolism. As there are only a few bacterial genomes related to Pine Wilt Disease, this work provides a contribution to the field.

View Publication

Share this:

  • Click to share on Facebook (Opens in new window)
  • Click to share on LinkedIn (Opens in new window)
  • Click to share on Pinterest (Opens in new window)
  • Click to share on Twitter (Opens in new window)
  • Click to print (Opens in new window)
  • JGI.DOE.GOV
  • Disclaimer
  • Accessibility / Section 508
Lawrence Berkeley National Lab Biosciences Area
A project of the US Department of Energy, Office of Science

JGI is a DOE Office of Science User Facility managed by Lawrence Berkeley National Laboratory

© 1997-2025 The Regents of the University of California