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September 30, 2011

Structural Analysis of Cow and Hoatzin Microbial Communities

Inside the guts of many animals, microbes break down the plant fibers ingested as part of their diet. These microbes are of interest to bioenergy researchers who want to learn from nature and apply these cellulosic degradation capabilities toward biofuel production. To this end, at the JGI, several sequencing projects have focused on the microbial communities in the guts of organisms such as termites, cows, and Tammar wallabies.

Hoatzin (Image by Maria G. Dominguez-Bello, University of Puerto Rico)

Hoatzin (Image by Maria G. Dominguez-Bello, University of Puerto Rico)

Some animals like the cow break down and ferment the biomass in their foregut, while termites count among hindgut fermenters. Another foregut fermenter is the hoatzin, a South American leaf-eating bird that is the focus of a 2009 JGI Community Sequencing Program project. The hoatzin breaks down plant biomass in its crop and its digestive system is similar enough to the cow’s that it’s been called “the flying cow of the Amazon.”

In the study published online on September 22 in The ISME Journal, Filipa Godoy-Vitorino, an NSF Fellow affiliated with the JGI, led a comparative analysis of the structures of the microbial communities in the foregut and hindgut of the cow and the hoatzin based on data generated by a high-density microarray PhyloChip. They found that there are shared microbes both in the foregut and hindgut of such phylogenetically distant hosts, but the structure of the microbial community in the cow indicated more microbial diversity.
Despite foregut fermentation having originated independently in birds and mammals, organ function led to the convergence of the microbiota in these fermentative organs.

“Despite the significant differences in host phylogeny, body size, physiology, and diet, the function seems to shape the microbial communities involved in fermentation,” Godoy-Vitorino and her colleagues wrote. “Regardless of the independent origin of foregut fermentation in birds and mammals, organ function has led to the convergence of the microbial community structure in phylogenetically distant hosts.”

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Filed Under: Science Highlights Tagged With: bioenergy, biofuel, biomass, cow rumen, metagenomics, microbial communities, termite

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