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January 12, 2016

Microbial Nitrogen Cycling along the Colorado River

Extensive uranium groundwater contamination at DOE’s legacy ore processing sites has resisted extensive remediation attempts. One of these sites lies within the upper Colorado River Basin. The sediments here are referred to as naturally reduced zones (NRZs) because they are generally nutrient-poor and have abundant iron sulfide minerals. There is concern that NRZs are acting… [Read More]

January 12, 2016

A Pathobiome Database for Bioenergy Trees

Poplars and pines have been plant flagship agro-forestry crops for bioenergy production, resulting in large amount of resources being devoted to its production and improvement. One of the most important threats to the sustainable growth of trees in plantation is attack by pathogens. Two important aspects in preventing outbreaks are early detection, monitoring and surveillance…. [Read More]

January 11, 2016

Early Diverging Lineages of Fungi

Fungi inhabit most of the world’s ecological niches where they perform numerous services that are central to ecosystem functioning. Despite significant advancements in our understanding of the evolutionary relationships within Kingdom Fungi, the earliest diverging events are still very poorly understood. Resolving the earliest branches in the Kingdom Fungi is essential to identify the characteristics… [Read More]

January 11, 2016

Snow Algae Comparative Genomics

Temperature is one of the most important abiotic determinants of the vitality, viability and distribution of life forms and therefore the biology of cold-adapted organisms is of broad general interest. As polar temperatures rise, the permanent frozen portion of the Arctic is shrinking, as is the geographical region with a summer average of 10ºC, which… [Read More]

January 11, 2016

How Ascomycetes Degrade Plant Biomass

Aspergilli are generalist species that are able to consume a broad range of substrates. In contrast, species such as P. anserina are much narrower in their substrate utilization profile, which correlates with its biotope on herbivore dung. The soil fungus T. reesei is an intermediate species, which has a broader biotope range than P. anserina,… [Read More]

January 11, 2016

Modeling Brachypodium-Trichoderma symbiosis

Secondary metabolites are a heterogeneous group of natural compounds that are considered to aid the producing organism in survival and basic functions. Trichoderma spp. are known to produce over 200 secondary metabolites, of which many have been found to have biological activity on plants, microbes and substrates. Among these metabolites, polyketides have important biological activities… [Read More]

January 10, 2016

Intermediate Wheatgrass Project

One of the selected CSP projects involves sequencing intermediate wheatgrass (Thinopyrum intermedium, alternately known as Agropyron intermedium)Intermediate Wheatgrass (IWG) is a highly productive perennial grass species that is being developed as a new biomass and grain crop. As a perennial crop, IWG can provide essential ecosystem services to current agricultural practices such as stabilizing soil with its deep root structure, reducing nutrient runoff, and limiting weed growth. IWG produces biomass quantities… [Read More]

January 8, 2016

Fungal Evolution of Truffle-Like Bodies

Hypholoma sublateritium is one of the proposed fungi to be sequenced as part of this project. (Gljivarsko Drustvo Nis, CC BY 2.0)The reproductive success of fungi is heavily influenced by climate. For those fungi that produce emergent mushroom-like fruit bodies, periods of drought or heat can severely curtail the spread of these fungi within an ecosystem due to rapid drying of the developing hymenium thus limiting spore production and dispersal. Some fungi have evolved the adaptation… [Read More]

January 7, 2016

Diurnal Cycles in Chlamydomonas

A grouping of two live Chlamydomonas cells at 1,000x magnification. The cells are flagellated, though the flagella are not visible. (Marc Perkins, CC BY-NC 2.0)Chlamydomonas reinhardtii is a DOE JGI flagship species and the premier reference organism for unicellular green algae. It is an important reference system for many aspects of plant cell and molecular biology, especially as they relate to energy and carbon metabolism including lipid and starch storage and utilization in photosynthetic systems. Chlamydomonas offers an unprecedented… [Read More]

January 6, 2016

Microbial Mutualism with Orchids

Mycorrhizal fungi usually transfer nitrogen and phosphorus to plants, and receive carbohydrates. However, the orchid mycorrhizal symbiosis is unique because the mycorrhizal fungi transfer carbon to the plant, at least during early developmental stages. All orchids are dependent on fungi for seed germination and form mycorrhizae with basidiomycete fungi. These mycorrhizal fungal species are primarily… [Read More]
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