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September 17, 2018

Meet a JGI Postdoc: Maureen Berg

JGI postdoc Maureen BergFrom September 17-21, 2018, we introduce you to some of the postdocs at the JGI in honor of National Postdoc Appreciation Week, which recognizes the contributions of these early career researchers. Through a series of hard-hitting questions, we find out what drives each one. What do you work on?  I work in the Environmental Genomics… [Read More]

September 7, 2018

Cracking the Code: Evolutionary Changes in the Genetic Code of Yeasts

CUG is translated as Leu in the standard code, and as Ser or Ala in the modified codes. Codons are shown in uppercase. (From Krassowski et al. Evolutionary instability of CUG-Leu in the genetic code of budding yeasts. Nat Commun. doi: 10.1038/s41467-018-04374-7. CC BY 4.0)Yeasts are some of the most important microbes used in biotechnology. Saccharomyces cerevisiae, the type of yeast used for making bread and beer, is just one representative of more than 1,500 yeast species found around the world. Currently, only a fraction of these yeasts has been harnessed for biotechnological applications. However, researchers studying various “non-conventional”… [Read More]

August 27, 2018

High Five: Celebrating the JGI-UC Merced Genomics Internship Program

Directly in front of the helix, JGI Director Nigel Mouncey and JGI-UC Merced Genomics Internship founders organizers Axel Visel, Suzanne Sindi and Zhong Wang are flanked by UC Merced student alumni and their JGI mentors.More than 20 UC Merced students have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, JGI’s Zhong Wang and Science Programs Deputy Axel Visel teamed with University of California (UC), Merced assistant professor Suzanne Sindi from the School of Natural Sciences and started a program that offered a handful… [Read More]

July 9, 2018

Advancing Awareness of User Science

SSURF 2018 attendeesBerkeley Lab User Facilities Prominent in SSURF Annual Meeting & Capitol Hill Office Visits. Like roads, water and energy systems, ports, and other critical infrastructure, scientific user facilities enable the innovation at the heart of U.S. economic competitiveness and national security. The Society for Science at User Research Facilities (SSURF) is a not-for-profit organization working… [Read More]

July 2, 2018

A Personal Stamp on the IGB

The signed steel beam upon its return from the JGI. (Paul Mueller)Beam-Signing Ceremony Collects Signatures for Posterity. On Friday, June 22, JGI Director Nigel Mouncey and Systems Biology Knowledgebase (KBase) CEO/CSO Adam Arkin gathered JGI and KBase staff for a historic ceremony. “The last time we convened together was 18 months ago to break ground,” Mouncey reminded the audience, referring to the January 2017 groundbreaking ceremony… [Read More]

April 30, 2018

May 30 JGI Safety & Wellness Fair in the Shadelands

ARF at JGI SWELL FairThe Joint Genome Institute (JGI) is hosting its 12th Annual Safety and Wellness (SWELL) Fair on Wednesday, May 30, and welcomes attendees from both staff and neighbors in the Shadelands. Click here to download a map.  WHEN: Wednesday, May 30, 2018, from 12pm-2pm WHERE: Joint Genome Institute Courtyard (2800 Mitchell Drive, Walnut Creek) The free SWELL Fair (click… [Read More]

April 22, 2018

Rethinking Agriculture from an Ecosystem Perspective

Evan DeLucia, director of CABBI, at the JGI 13th Annual Genomics of Energy & Environment Meeting. Click on the image to watch his talk, or go to bit.ly/JGI2018DeLucia.As the global population grows toward 10 billion people, we need to find ways to better manage the farmland that we have, while also removing CO2 from the atmosphere, said Evan DeLucia at JGI’s 13th Annual Genomics of Energy & Environment Meeting in San Francisco, Calif. As director of the Center for Advanced Bioenergy and Bioproducts… [Read More]

April 22, 2018

Assessing Soil Microbial Responses to Land Use Change

Krista McGuire of the University of Oregon at the JGI 13th Annual Genomics of Energy & Environment Meeting. Click on the image to watch her talk, or go to bit.ly/JGI2018McGuire.In a wide ranging talk that took the audience from the island of Manhattan to Southeast Asia, Krista McGuire, an associate professor in the Department of Biology at the University of Oregon, presented work on microbial responses to two key types of land use change: urbanization and agriculture. Most of the world’s population now resides… [Read More]

February 7, 2018

Determining the Citrus Ancestral Home

Mandarin (Citrus reticulata) orchards near Ailaoshan, Yunnan Province, China. (Fred Gmitter)Citrus is a major worldwide crop. In 2017, the US Department of Agriculture’s Foreign Agricultural Service estimated production would exceed 50 million metric tons, with 10 percent of that contributed by the United States. To defend this crop against Huanglongbing (a.k.a., citrus greening), an infectious disease destroying whole orchards, researchers have begun employing genomics to… [Read More]

January 26, 2018

IMG/VR Database Triples in Size

Growth over time in the total and unique number of viral sequences in IMG/VR. (Image composite by David Paez-Espino).Got 12 Gb of free storage to download it all? To better understand how Earth’s vast and diverse microbial population helps regulate global nutrient cycles, it helps to understand how viruses infect microbes, and affect their functions and metabolic processes. Two years ago, even though the number of viruses is estimated to be at least… [Read More]
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