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Brown mercury-producing bacterium in ScienceDaily

Desulfovibrio desulfuricans strain ND132 is an organism that thrives in sediments and soils without oxygen — the places in lakes, streams and wetlands where mercury contamination is converted to methylmercury. It is representative of a group of organisms that “breathe” sulfate instead of oxygen and are largely responsible for mercury methylation in nature. “This is… [Read More]

Cheryl Kerfeld presents ASBMB award lecture

Cheryl A. Kerfeld, a structural biologist and the head of the U.S. Department of Energy Joint Genome Institute’s Education and Structural Genomics Programs, has won the American Society for Biochemistry and Molecular Biology’s Award for Exemplary Contributions to Education. Kerfeld will present her award lecture, titled “Sequence and Consequence,” at 12:30 p.m. on April 10… [Read More]

DOE JGI’s Cheryl Kerfeld among 2011 ASBMB awardees in Washington DC

Cheryl A. Kerfeld, a structural biologist and the head of the Department of Energy Joint Genome Institute’s Education and Structural Genomics Program, won the ASBMB Award for Exemplary Contributions to Education. Kerfeld, who also serves as an adjunct professor at the University of California, Berkeley, was named the winner for encouraging effective teaching and learning… [Read More]

Fungal Genomics blog re DOE JGI User Meeting

Personally, my favorite talk at the last 6th Annual DOE JGI Users Meeting at Walnut Creek was Rob Knight‘s contribution on ‘Spatially and Temporally Resolved Studies of the Human Microbiome‘. Rob was creative and integrative. Displaying the biogeography of bacterial communities on the human body using UniFrac and QUIME was astounding. Read more at the… [Read More]

Eisen blogs Twitter wrap-up of the DOE JGI User Meeting

Off to another meeting so don’t have time to write up details of the JGI User Meeting that just ended.  But I am posting my tweets and some related tweets here.  Also, apparently videos of the talks will be available soon. Will try to clean up the style of the posts ASAP but on the… [Read More]

Tasmanian devils at DOE JGI User Meeting in GenomeWeb

As part of the large-scale conservation effort he calls “Project Ark,” Schuster and his team intend to genotype hundreds of Tasmanian devils, he told attendees of the sixth annual Department of Energy Joint Genome Institute User Meeting held in Walnut Creek, Calif., this week. To date, he said, devil tumor facial disease does not seem… [Read More]

DOE JGI as ‘Genomics Foundry’ in GenomeWeb

The Joint Genome Institute plans to transition from a sequencing center to a “genomic foundry” — a one-stop shop for large-scale functional annotation, single-cell genomics and transcriptomics, high-throughput custom sample prep, and analysis expertise, among other proposed services, said Eddy Rubin at JGI’s sixth annual User Meeting in Walnut Creek, Calif. Ultimately, Rubin said, he… [Read More]

Earth Microbiome Project in Sacramento Bee

To understand microbes (Bacterial, Archaeal, Eukaryal and Viral) in terms of whom they are and what they do is the challenge of microbial ecology. The EMP presents a revolution in how this problem is tackled and defines both questions and potential suite of tools to provide answers.  Key participants in this unprecedented project include BGI,… [Read More]

Earth Microbiome Project in GenomeWeb

BGI will provide a range of services and support for the Earth Microbiome Project, an effort to sample, sequence, and analyze microbial communities from all over the globe. The multi-disciplinary EMP effort, the largest sequencing project yet undertaken, will conduct metagenomics studies of 200,000 samples of microbes from soil, air, sea, and freshwater systems from… [Read More]