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Berkeley Lab’s requirements for second campus in San Francisco Business Times

Lawrence Berkeley Lab late Monday laid out the details for a new second campus. It is looking to consolidate facilities like the Joint BioEnergy Institute in Emeryville, the Joint Genome Institute in Walnut Creek, the National Energy Research Scientific Computing Center in Oakland and the Life Sciences Division in West Berkeley. Read more in the… [Read More]

DOE JGI’s CSP projects in GenomeWeb Daily News

JGI said its action follows the exponential increase of its sequence output in recent years. Just over the past year, the institute’s sequencing output has leapt to 6 terabytes, up from 1 terabyte at the end of the 2009 fiscal year.“We’re really interested in undertaking projects that either require specific upfront molecular biology, very large… [Read More]

DOE JGI in Science’s Insights of the Decade

Edward Rubin and Len Pennacchio of the Joint Genome Institute in Walnut Creek, California, and colleagues figured out that some of this conserved DNA helps regulate genes, sometimes from afar, by testing it for function in transgenic mouse embryos. Studies by the group and others suggested that noncoding regions were littered with much more regulatory… [Read More]

Plant pathogen genomes on PhysOrg

The project to sequence the genomes of Phytophthora ramorum and Phytophthora sojae started in 2002. The sequencing of Phytophthora ramorum represented the fastest sequencing of a newly emerged pathogen other than the Severe Acute Respiratory Syndrome virus; Phytophthora ramorum was identified in 2000 and its draft sequence was complete by 2004. The work, which was… [Read More]

DOE JGI’s genomics data volumes on ESNet Updates

We observed for the first time significant volumes of genomics data traversing the network as the Joint Genome Institute sent over 1 petabyte of data to NERSC. JGI alone accounted for about 10% of last month’s traffic volume. Read more on ESNet. [Read More]

100 Rhizobium Genomes Project on INRA’s MyCorWeb page

A joint venture has been established between the Centre for Rhizobium Studies (CRS) led by Dr Wayne Reeve at Murdoch University (Australia) and the Joint Genome Institute (JGI, USA) led by the Head of the Microbial Program Dr Nikos Kyrpides to completely decipher the genetic code for 100 geographically distinct root nodule rhizobial strains.’ Read more on the… [Read More]

DOE’s Magellan cloud project on ESnet

We were glad to see DOE’s Magellan project getting some well-deserved recognition by the HPCwire Readers’ and Editors’ Choice Award at SC10 in New Orleans. Magellan investigates how cloud computing can help DOE researchers to manage the massive (and increasing) amount of data they generate in scientific collaborations. Magellan is a joint research project at… [Read More]

Iowa colleges team with DOE JGI to Interpret-A-Genome

Augustana and two other Quad-City higher education institutions—Eastern Iowa Community College District and Black Hawk Community College—have partnered together to adopt the microbe Meiothermus ruber and join the Interpret a Genome project through the U.S. Department of Energy-Joint Genome Institute (DOE-JGI).   Read more at the Aledo Times Record. [Read More]

Award for DOE’s Magellan Cloud Computing Project

One of the first key users of NERSC’s Magellan cloud computing system was DOE’s Joint Genome Institute (JGI). In March, the facility had a sudden need for increased computing resources, and in less than three days, NERSC and JGI staff provisioned and configured hundreds of processor cores on the Magellan system to match the computing… [Read More]