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JGI to get PacBio machine on Forbes

PacBio’s DNA-sequencing technology generated a huge amount of excitement when it was described in a cover article in Science because it could someday make it possible to sequence an entire genome in minutes for less than $1,000. The first machines now being rolled out are only a step on the way to this goal, and… [Read More]

JGI named a PacBio customer on GenomeWeb

The first 10 early-access customers are Baylor College of Medicine, the Broad Institute, Cold Spring Harbor Laboratory, the US Department of Energy Joint Genome Institute, the Genome Center at Washington University, Monsanto, the National Cancer Institute/SAIC-Frederick, the National Center for Genome Resources, the Ontario Institute for Cancer Research, and Stanford University. Read more at GenomeWeb. [Read More]

Brachypodium genome project collaborator Oregon State’s release

“What this work provides is a highly informative roadmap to explore and improve plants of great agricultural value, like wheat,” said James Carrington, director of the Center for Genome Research and Biocomputing, and a co-author of the study. “The quality of science that can be done with plants like Brachypodium is really exceptional.” Read more… [Read More]

Brachypodium project in Biofuels Digest

In Washington, researchers at the USDA and the Joint Genome Institute today announced that they have completed sequencing the genome of Brachypodium distachyon, similar to switchgrass – as a model organism that is similar to but easier to grow and study than important agricultural crops, used by plant scientists the way other researchers use lab… [Read More]

GEBA Project: “Beyond Darwin’s Wildest Dreams”

Recently, Eisen and his colleagues unveiled a pilot project that they hope will help the community make the most of existing microbial genome data with a phylogeny-driven resource called the Genomic Encyclopedia of Bacteria and Archaea at the Joint Genome Institute. Currently available genomic resources for microbes are from a very narrow phylogenetic distribution of… [Read More]

Brachypodium genome project on CORDIS

Some grass species play a pivotal role in meeting our food supply needs. We have also seen a surge in the domestication of new grass crops for feedstock production and sustainable energy. Experts say, however, that failure to understand how genes work and a lack of knowledge about their large and complex genomes lead to… [Read More]

Brachypodium project on Huffington Post

In a study published Feb. 11 in the journal Nature, researchers from the department’s Joint Genome Institute in Walnut Creek, which is managed in part by Lawrence Berkeley National Laboratory, sequenced a form of wild grass in order to derive a genome specifically adapted for biomass and biofuel production. Read more at The Huffington Post.  [Read More]

JGI’s involvement in Human Microbiome Project on GenomeWeb

The center’s Web portal aims to provide researchers with web-based visualization and query applications and software, as well as a robust computational analysis of HMP data. The Website also hosts information on standing operating procedures, a resource for community involvement in reference strain selection, and quality control measures. In order to meet all of the… [Read More]

Brachy genome project on ScienceCentric

Brachypodium is actually a wild annual grass plant, native to the Mediterranean and Middle East, with little agricultural importance and is of no major economic value itself. But it allows researchers to obtain genetic information for grasses much more easily than some of its related, but larger and more complex counterparts with much larger genomes… [Read More]