Rapidly growing trees like poplars and willows are candidate “biofuel crops” from which it is expected that cellulosic ethanol and higher energy content fuels can be efficiently extracted.  Domesticating these crops requires a deep understanding of the physiology and genetics of trees, and scientists are turning to long-domesticated fruit trees for hints. The relationship between… [Read More]

From the stockings decorating mantles to the new outfits in display windows calling to shoppers, cotton is woven into the fabric of the holiday season. For bioenergy researchers, however, fiber composition matters more than color and texture as each cotton strand is composed of more than two dozen coils of cellulose, a target biomass for… [Read More]

One of the first chemical reactions children learn is the recipe for photosynthesis, combining carbon dioxide, water and solar energy to produce organic compounds. Many of the world’s most important photosynthetic eukaryotes such as plants did not develop the ability to combine these ingredients themselves. Rather, they got their light-harnessing organelles—chloroplasts—indirectly by stealing them from… [Read More]

For architects, “form to function” means designing a building that best serves its intended purpose. For genomics researchers, the term could be applied to the ongoing transition from not just studying the genetic code of an organism, but also understanding what roles those genes play in the biology of the organism that encodes them. Several… [Read More]

The button mushroom occupies a prominent place in our diet and in the grocery store where it boasts a tasty multibillion-dollar niche, while in nature, Agaricus bisporus is known to decay leaf matter on the forest floor. Now, owing to an international collaboration of two-dozen institutions led by the French National Institute for Agricultural Research… [Read More]

While the flower may attract the bee and the admiring eye of the passerby, it is the unseen complex network of life below ground where the action is. The microbial community or microbiome that inhabits the rhizosphere and endosphere —the niches immediately surrounding and inside a plant’s root—facilitates the shuttling of nutrients and information into… [Read More]

For want of a nail, the nursery rhyme goes, a kingdom was lost. A similar, seemingly innocuous change—the evolution of a lineage of mushrooms—may have had a massive impact on the carbon cycle, bringing an end to the 60-million year period during which coal deposits were formed. Coal generated nearly half of the roughly four… [Read More]

In the aftermath of the Deepwater Horizon oil spill in the Gulf of Mexico two years ago, various strategies were deployed to prevent 4.9 million barrels of light crude oil from fouling the waters and reaching the shores. A team of Lawrence Berkeley National Laboratory (Berkeley Lab) researchers found that nature also played a role… [Read More]

Arranging DNA fragments into a genome sequence that scientists can interpret is a challenge often compared to assembling a puzzle, except there is no box to provide an idea of what the picture is even supposed to be. Sometimes there’s guidance in the form of other publicly-available DNA sequences from related organisms that can be… [Read More]

Without fungi and microbes to break down dead trees and leaf litter in nature, the forest floor might look like a scene from TV’s “Hoarders.” Massive-scale genome sequencing projects supported by the U.S. Department of Energy (DOE) and being carried out at the DOE Joint Genome Institute (JGI) highlight the importance of learning how the… [Read More]