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Content Tagged "bacteria"

GEBA project on R&D Mag

The Department of Energy Joint Genome Institute (DOE JGI) has published the initial “volume” of the Genomic Encyclopedia of Bacteria and Archaea (GEBA). Presenting a provocative glimpse into this uncharted territory, an analysis of the first 56 genomes representing two of the three domains of the tree of life appears in the December 24 edition… [Read More]

UC Davis news release on GEBA project

Genome scientists from the U.S. and Germany have assembled the first pages of a comprehensive encyclopedia of genomes of all the microbes on Earth. The results, published Dec. 24 in the journal Nature, will help biologists find new genes and fill out the branches of the “Tree of Life.” “This is a rich sampling of… [Read More]

GEBA project on Press Trust of India

A preview of the initial “volume” of the Genomic Encyclopedia of Bacteria and Archaea (GEBA), which was published by the Department of Energy Joint Genome Institute (DOE JGI), has recently appeared in journal Nature. The report presented an analysis of the first 56 genomes representing two of the three domains of the tree of life…. [Read More]

NYTimes’ GEBA article noted by GenomeWeb

Carl Zimmer at the New York Times discusses the Genomic Encyclopedia of Bacteria and Archaea and the recent Nature paper on the first results from the effort. So far, Jonathan Eisen and his colleagues have sequenced 56 bacterial and archaeal genomes and found 1,768 new gene families. Zimmer adds that the Joint Genome Institute has… [Read More]

GEBA project featured on ScienceDaily

Two thousand years after Pliny the Elder compiled one of the earliest surviving encyclopedic works, and in the spirit of his goal of providing “light to the obscure,” the Department of Energy Joint Genome Institute (DOE JGI) has published the initial “volume” of the Genomic Encyclopedia of Bacteria and Archaea (GEBA). Presenting a provocative glimpse… [Read More]

GEBA project featured in NYTimes

If you want to appreciate the diversity of life on earth, you will need a microscope…. Yet scientists still know very little about our microbial planet. The genomes of only about 1,000 species of microbes have been sequenced. That leaves 99.99999 percent to go. Making matters worse, the genomes scientists have sequenced so far are… [Read More]

Cheryl Kerfeld at iPlant Genomics Education Conference

We learned about many kinds of annotation projects. Charles Hardnet from Spelman College showed electron micrographs of the phage that his students isolated and annotated through their school’s partnership with HHMI. For the bacterial projects, Derek Wood, Brad Goodner, Daniel Rhoades, and Steve Slater from colleges across the US described a joint endeavor where students… [Read More]

Genomic model research on Huliq

Cavicchioli and his lab compared the traits of S. alaskensis‘ genome against the genome of Photobacterium angustum, a bacterium collected and sequenced from the warmer, nutrient-rich waters off Sydney, Australia. They then tested the model developed based on these two genomes to successfully predict whether several dozen bacterial samples were those that grow in nutrient-rich… [Read More]

Genomic model research on The Medical News

With other UNSW and US colleagues, Professor Cavicchioli compared the genomes of two common ocean bacteria that employ different strategies for living: one lives in nutrient-rich waters and is fast to grow and replicate itself, and another lives in poor-nutrient waters, and grows more slowly. The findings are published in the Proceedings of the National… [Read More]

Stinky bacteria for cleaning radioactive metals in AZ mine

Wall and her team are investigating the basic genetics and metabolism of these bacteria. They are building on discoveries funded by the Department of Energy’s Joint Genome Institute that has sequenced the genomes of about 14 strains and is working on a dozen more. With a roadmap of the 3,570,858 base pairs of DNA from… [Read More]