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April 19, 2011

Roberts Wesleyan College in DOE JGI Undergraduate Research Program in Microbial Genome Annotation

Dr. Roll attended an informational workshop at the end of January at the DOE Joint Genome Institute in Walnut Creek, Calif. Since that time, he has been preparing plans and programs that will allow Roberts students to participate in this initiative in a hands-on manner. The College already has been assigned a specific genome for… [Read More]

March 18, 2011

Toward a Genomic Encyclopedia of Fungi

Fungi are key components of terrestrial ecosystems and help maintain the interactions between a myriad of species of animals, plants and bacteria that make up these environments. With the ability to thrive in a wide variety of ecological niches, fungi are essential to the global carbon cycle, and the enzymes and metabolites they produce are… [Read More]

March 16, 2011

DOE JGI’s Community Sequencing Program Project Call in GenomeWeb

The Department of Energy’s Joint Genome Institute said today that it is now accepting letters of intent from researchers seeking to use the genomics technologies available through its Community Sequencing Program (CSP). JGI’s sequencing program provides the scientific community with access to a range of high-throughput technologies for use in large-scale sequence-based genomic projects that… [Read More]

March 8, 2011

UCLA team makes isobutanol from cellulose on ScienceDaily

While there were many possible microbial candidates, the research team ultimately chose Clostridium cellulolyticum, which was originally isolated from decayed grass. The researchers noted that their strategy exploits the host’s natural cellulolytic activity and the amino acid biosynthetic pathway and diverts its intermediates to produce higher alcohol than ethanol. The researchers also noted that Clostridium… [Read More]

January 31, 2011

Cow rumen metagenome study in EarthSky

Enter: the cow. If cows are good at anything, it’s digesting plant material until it turns into sugar; Dr. Rubin noted that cows have been eating grass for a few million years. That’s why Rubin’s team decided to do major genetic analysis of microbes inside the stomachs of cows. He explained that he was interested… [Read More]

January 28, 2011

Rumenating on improving biofuel production

Developing alternative fuels from plants has been challenging in part due to the high costs associated with processing plant biomass to more easily convert it into sugars and from there into biofuels. Ruminants such as the cow, however, can eat more than a hundred pounds of plant matter a day and break it down.  Switchgrass… [Read More]

January 28, 2011

Cow rumen metagenome study on COSMOS Magazine

The result was 270 billion base pairs of genetic code, almost a hundred times more than the human genome, and an estimated two million potential genes to be investigated. To find which bacteria could digest cellulose, the researchers compared codes with known regions of Carbohydrate Active Enzymes called CAZymes. “Regions include domains that bind cellulose… [Read More]

January 28, 2011

Cow rumen metagenome study on Mother Nature Network

Ethanol makers will produce about 13 billion gallons of the renewable fuel this year, chiefly from corn. A 2007 law requires annual use of 36 billion gallons from 2022 and reserves 21 billion gallons of it for “advanced” biofuels.   The U.S. government offered $1.5 billion in October to help bring next-generation biofuels to market…. [Read More]

January 28, 2011

Cow rumen metagenome study on Scicasts

“The problem with second-generation biofuels is the problem of unlocking the soluble fermentable sugars that are in the plant cell wall,” said University of Illinois animal sciences professor Roderick Mackie, an author on the study whose research into the microbial life of the bovine rumen set the stage for the new approach. “The cow’s been… [Read More]

January 28, 2011

Cow rumen metagenome study on Times Live

They used new genetic sequencing techniques to find microbes that make enzymes that in turn can break down tough grasses into usable products. Writing in the journal Science on Thursday, they said they took samples directly from the rumen — the organ in cattle that ferments and breaks down grass. Read more on Times Live… [Read More]
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