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Content Tagged "bioenergy"

Dietary impacts on hoatzin crop microbial communities

Many DOE JGI metagenomic projects focus on microbial communities in the guts of the cow, termite and even the desert locust, all known to break down plant biomass for energy. In studying these and other gut microbial communities, researchers hope to identify and isolate genes involved in plant biomass degradation, and apply them to biofuel… [Read More]

A toolkit for T. reesei

The availability of an organism’s genome sequence is useful for improving downstream applications such as large-scale biofuel production, but it is only the first step on this path. In the case of the fungus Trichoderma reesei, whose genome sequence was published by the DOE JGI in 2008, the cellulases in T. reesei have multiple industrial… [Read More]

1000 Fungal Genomes project in The Daily Barometer

Joey Spatafora, an associate professor at Oregon State University, is leading an international project to sequence the genomes of a thousand fungi, a project aptly named 1000 fungal genomes.    “It’s a really, really exciting time in fungal biology because we can sequence fungal genomes more easily than we could ten years ago,” Spatafora said. The Daily Barometer [Read More]

Cotton project in the Delta Farm Press

An international consortium, led by Professor Andrew Paterson of the University of Georgia, has made publicly available the first ‘gold-standard’ genome sequence for cotton. Cotton was among the first plants studied at the molecular level, and the sequence obtained by Paterson and his team is the culmination of a 20-plus year effort in the analysis… [Read More]

Engineering bacteria to produce biodiesel

Biodiesel production typically starts with oil-rich energy crops such as soybean, palm or rapeseed, which are harvested and then converted into fatty acids for use as fuel. The cost of expanding oilseed crop production is a limiting factor in allowing biodiesel to compete with fossil fuel sources. One alternative to using oilseed crops that many… [Read More]

Spider mite genome project in CBC News

“They can change the repertoire [of genes] that they’re using in order to be able to feed on hosts that they would not be adapted to,” said Miodrag Grbic, a University of Western Ontario biologist, who led an international project to sequence the spider mite’s genome. The results were published this week in the journal… [Read More]

Mite genome to help protect bioenergy feedstocks

The tiny two-spotted spider mite extracts nutrients from the leaves of 1,100 plant species including bioenergy feedstock crops. The global cost of chemically controlling this pest is estimated to be around $1 billion annually. Given its potential to significantly reduce crop yields and inhibit biofuel production, the spider mite Tetranychusurticaewas selected for the 2007 DOE… [Read More]

Spider mite genome project in GenomeWeb

The spider mite, named for its ability to spin webs, belongs to an arthropod sub-group comprised of so-called chelicerates and is capable of consuming more than 1,100 plant species. This trait, coupled with its ability to develop resistance to most commonly used pesticides, have made it a potent pest, known for damaging ornamental plants and… [Read More]

DOE JGI research featured in io9

Last month I was lucky enough to visit one of the biggest genomics labs in the world. At the Joint Genome Institute (JGI) in Walnut Creek, CA, huge rooms full of genome sequencing machines work 24/7 to crunch the codes that create life. And the research here, funded by the US Department of Energy, has… [Read More]

Danforth Center highlights plant projects for CSP 2012

The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has selected two projects from a highly competitive pool of applications, submitted by Danforth Plant Science Center Principal Investigators, Dr. Thomas Brutnell and Dr. Todd Mockler as part of its 2012 Community Sequencing Program (CSP). Read more at the Danforth Center News site. [Read More]