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Content Tagged "microbes"

Earth Microbiome Project in Sacramento Bee

To understand microbes (Bacterial, Archaeal, Eukaryal and Viral) in terms of whom they are and what they do is the challenge of microbial ecology. The EMP presents a revolution in how this problem is tackled and defines both questions and potential suite of tools to provide answers.  Key participants in this unprecedented project include BGI,… [Read More]

Cow rumen metagenome study in R&D Magazine

In the new study, the researchers focused on switchgrass, a promising biofuels crop. After incubating the switchgrass in the rumen for 72 hours, researchers conducted a genomic analysis of all of the microbes that adhered to switchgrass. This “metagenomic” approach, led by Edward Rubin, of the DOE Joint Genome Institute and the Lawrence Berkeley National… [Read More]

Cow rumen metagenome study on LabSpaces

Rubin’s postdoctoral fellows Matthias Hess and Alex Sczyrba used one of the most promising large-scale bioenergy crops — switchgrass (Panicum virgatum) – and let the cows’ microbial symbionts located in the foregut perform their magic. Read more on LabSpaces [Read More]

JGI’s involvement in Human Microbiome Project on GenomeWeb

The center’s Web portal aims to provide researchers with web-based visualization and query applications and software, as well as a robust computational analysis of HMP data. The Website also hosts information on standing operating procedures, a resource for community involvement in reference strain selection, and quality control measures. In order to meet all of the… [Read More]

Jonathan Eisen, GEBA project in Nature

“The broad brush strokes of microbial diversity are not adequately represented in that first thousand,” says Stephen Giovannoni, a microbiologist at Oregon State University in Corvallis. “It’s absolutely important that we sequence more.” Enter the Genomic Encyclopedia of Bacteria and Archaea, a project spearheaded by the US Department of Energy’s Joint Genome Institute (JGI) in… [Read More]

New IMG tutorial suites

OpenHelix today announced the availability of new tutorial suites on Integrated Microbial Genomes (IMG), Integrated Microbial Genomes with Microbiome Samples (IMG/M), NCBI Viral Genomes and Viral Bioinformatics Resource Center (VBRC). IMG is a data management platform for analyzing microbial genomes sequenced by the Joint Genome Institute (JGI) of the U.S. Department of Energy and including… [Read More]

Dead zone metagenomic study in Newstrack India

Dead zones are areas of low dissolved-oxygen concentrations caused by climate change that play a major role in the ocean ecosystem and global climate balance because they are a source of greenhouse gases and sinks for nitrogen, robbing many ocean life forms of this critical nutrient.   Scientists have observed that the zones – found… [Read More]

Dead zone metagenome study on the CBC

Canadian and U.S. researchers have mapped the genome of a microbe that lives in ocean “dead zones,” areas of low-oxygen water that are expanding because of climate change. Researchers at the University of British Columbia and the U.S. Department of Energy say the microbe, called SUP05, is the most abundant organism in these oxygen-minimum zones… [Read More]

Marine metagenome study in New Kerala

In a new study, a team of scientists has mapped the genome of a microbe that is a key biological indicator of oceanic dead zones. The study was carried out by a team of researchers at the University of British Columbia, along with colleagues at the US Dept. of Energy Joint Genome Institute. “Microbes specialize… [Read More]

OMZ metagenomic study on redOrbit

In the Oct. 23 issue of the journal Science, researchers from the University of British Columbia and the U.S. Department of Energy Joint Genome Institute (DOE JGI) describe the metagenome of an abundant but uncultivated microbe, known as SUP05, that is silently helping to shape the ecology of [oxygen minimum zones] worldwide. Researchers studied the… [Read More]