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Content Tagged "microbial genomics"

Poplar bacteria project on redOrbit

To find out what makes these microbe-plant interactions “tick,” scientists at the U.S. Department of Energy’s (DOE) Brookhaven National Laboratory decoded the genome of a plant-dwelling microbe they’d previously shown could increase plant growth by 40 percent. Their studies, described online in PLoS Genetics, identified a wide range of genes that help explain this symbiotic… [Read More]

Poplar bacteria project on GenomeWeb

An international research team reports the draft sequence of the plant-growth promoting endophytic bacterium Enterobacter sp. 638 genome. Their annotations revealed a set of genes related to the plant niche adaptation of the bacterium, including those that code for survival in the rhizosphere, root adhesion, and establishment inside the plant, among others. Their findings also… [Read More]

Poplar bacteria project on Nano Patents blog

The Brookhaven team has been studying a species of bacteria isolated from the roots of poplar trees. “Poplar is a model species for biofuel production, in part because of its ability to grow on marginal soils unsuitable for food crops,” said scientist Daniel (Niels) van der Lelie, who leads the research program. Previous studies by… [Read More]

GEBA Project: “Beyond Darwin’s Wildest Dreams”

Recently, Eisen and his colleagues unveiled a pilot project that they hope will help the community make the most of existing microbial genome data with a phylogeny-driven resource called the Genomic Encyclopedia of Bacteria and Archaea at the Joint Genome Institute. Currently available genomic resources for microbes are from a very narrow phylogenetic distribution of… [Read More]

GEBA project on Microbe World

The Joint Genome Institute at the Energy Department has started what it calls a “genomic encyclopedia,” a collection of genomes from diverse microbes. Using an evolutionary approach that differs in strategy from how scientists originally chose organisms for sequencing, researchers hope to discover many new kinds of genes. According the New York Times, “the genomic… [Read More]

GEBA project on The Davis Enterprise

With the first volume of a planned encyclopedia of genomes of all the planet’s microbes, UC Davis’ Jonathan Eisen and his American and German colleagues hope to begin to change how microbes are studied. With a sampling of the diversity with 56 genomes in today’s edition of the journal Nature, they argue for research that’s… [Read More]

GEBA project on Ars Technica

We’ve tended to measure our success with sequencing genomes in terms of our ability to sequence the billions of bases in the human genome. But the progress has made completing the genomes of bacteria, which are typically a thousand times smaller, relatively trivial. For these organisms, we actually have the luxury of being able to… [Read More]

GEBA project on TerraDaily

Two thousand years after Pliny the Elder compiled one of the earliest surviving encyclopedic works, and in the spirit of his goal of providing “light to the obscure,” the Department of Energy Joint Genome Institute (DOE JGI) has published the initial “volume” of the Genomic Encyclopedia of Bacteria and Archaea (GEBA). Presenting a provocative glimpse… [Read More]

GEBA project on Green Car Congress

Genome researchers from the US and Germany have published the initial “volume” of the Genomic Encyclopedia of Bacteria and Archaea (GEBA)—an analysis of the first 56 genomes sequenced from the two domains. The paper appeared in the 24 December edition of the journal Nature. Read more on Green Car Congress. [Read More]

GEBA project on Scientific Blogging

In hopes of exploring that realm and expanding our understanding of microbes, a team from the the Department of Energy’s Joint Genome Institute (DOE JGI) have released the first volume of the Genomic Encyclopedia of Bacteria and Archaea (GEBA), an analysis of the first 56 genomes representing two of the three domains of the tree… [Read More]