Archive

  • Visit JGI.DOE.GOV
All JGI Features

November 5, 2020

The GEM catalogue fills gaps in the tree of life. (Stephen Nayfach)

A phylogenetic tree was built for Bacterial and Archaeal orders from the GEM catalogue and previously existing reference genomes. Green branches indicate new lineages represented only by the GEM catalogue. The inner strip chart indicates whether an order is newly identified (green; represented only by GEMs) or was previously known (light gray; represented by a reference genome). The next strip chart indicates if an order is uncultured (blue; represented only by metagenome-assembled genomes) or cultured (gray; represented by an isolate genome). The next four strip charts indicate the environmental distribution, while the bar plot indicates the number of genomes from the GEM catalogue recovered from each order. The GEM catalogue contains metagenome-assembled genomes that are broadly distributed across the tree of life and includes numerous new order-level clades. Vast regions of the tree are represented only by uncultivated genomes from the GEM catalogue and previous studies. (Stephen Nayfach)

A phylogenetic tree was built for Bacterial and Archaeal orders from the GEM catalogue and previously existing reference genomes. Green branches indicate new lineages represented only by the GEM catalogue. The inner strip chart indicates whether an order is newly identified (green; represented only by GEMs) or was previously known (light gray; represented by a reference genome). The next strip chart indicates if an order is uncultured (blue; represented only by metagenome-assembled genomes) or cultured (gray; represented by an isolate genome). The next four strip charts indicate the environmental distribution, while the bar plot indicates the number of genomes from the GEM catalogue recovered from each order. The GEM catalogue contains metagenome-assembled genomes that are broadly distributed across the tree of life and includes numerous new order-level clades. Vast regions of the tree are represented only by uncultivated genomes from the GEM catalogue and previous studies. (Stephen Nayfach)

More from the JGI archives:

  • Software Tools
  • Science Highlights
  • News Releases
  • Blog
  • User Proposals
  • 2018-24 Strategic Plan
  • Progress Reports
  • Historical Primers
  • Legacy Projects
  • Past Events
  • JGI.DOE.GOV
  • Disclaimer
  • Accessibility / Section 508
Lawrence Berkeley National Lab Biosciences Area
A project of the US Department of Energy, Office of Science

JGI is a DOE Office of Science User Facility managed by Lawrence Berkeley National Laboratory

© 1997-2025 The Regents of the University of California