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May 24, 2013

Microbial genomes help propose phylum name

Metagenomicsand single-cell genomics are tools helping researchers learn more about the “biological dark matter” that has not been cultivated and studied in the laboratory. In an article published May 14, 2013 in Nature Communications. [Read More]

May 17, 2013

The genetic diversity of the maize microbiome

The rhizosphere is the space in, on and around the plant roots where microbes in the plant interact with the microbes in the soil. The DOE JGI did a study with the plant Arabidopsis. [Read More]

May 10, 2013

A new technique for microbial genome assembly

The DOE Joint Genome Institute is also a national user facility focused on developing tools that more cost-effectively enable the assembly and analysis of the sequence that it generates. [Read More]

May 3, 2013

Marine metagenome offers clues to ocean nitrogen cycle

Nitrification is the process by which ammonia is converted first into nitrites and then into nitrates, a form of nitrogen that can then be used by plants to grow. However, understanding how the nitrogen cycle works in marine environments is equally crucial. Until 1977, scientists believed that ammonium could only be oxidized by aerobic bacteria…. [Read More]

April 19, 2013

Termite diets dictate microbes in their guts

Realtors and homeowners cringe at the thought of termites on their properties, but for bioenergy researchers, these insects are rich harbors of microbial communities that can break down woody lignocellulose. In 2007, the DOE Joint Genome Institute sequenced the microbes in the hindgut of termites from Costa Rica (from the Nasutitermesgenus) to identify the genes… [Read More]

April 5, 2013

A trace element’s central role in harmful algal blooms

Four years after it first appeared and devastated the scallop industry, the algal masses that turned the bays of Long Island, NY brown disappeared. [Read More]

March 29, 2013

A peach of a genome with breeding lessons for biofuels crops

Several plants sequenced by the DOE Joint Genome Institute have been considered “flagship” genomes due to their importance to DOE mission and plant science. Among these plants are poplar, the first tree sequenced and a candidate bioenergy feedstock, and soybean, the primary source of biodiesel in the United States. Other plant genomes are important for… [Read More]

March 22, 2013

Large toolset for detecting genetic variation in poplars

Beyond their status as a fast-growing candidate biofuels feedstock. [Read More]

March 15, 2013

Bacterial sequence to help understand ant fungal gardens

Leaf-cutter ants forage for leaves that they use to cultivate a fungus in specialized gardens. (Wikipedia, CC-BY-SA-3.0,2.5,2.0,1.0)Leaf-cutter ant colonies are comprised of millions of ants harvesting hundreds of kilos of leaves annually for use in growing their primary food source, a fungus. The fungal gardens tended by these ants allow them to convert plant biomass on a very large scale. Bioenergy researchers are looking at the microbial composition of the fungal… [Read More]

March 8, 2013

Comparing extremophile isolates from Yellowstone

Researchers isolated and sequenced four species of Hydrogenobaculum. [Read More]
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