To set up flexible, repeatable experiments on plants and microbes, Trent Northen’s group at Berkeley Lab created a fabricated ecosystem – an EcoFAB. These small plastic growth chambers let researchers around the world compare their work consistently. And EcoFABs also work well in the classroom. This episode, we visit Los Medanos College to see EcoFabs in action in Jill Bouchard’s BIO 21 lab course.
Natural Prodcast Episode 23 – Aaron Puri
Aaron Puri of the University of Utah on carbon-fixing methylotrophs, quorum sensing, and inverse stable isotopic labeling to explore biosynthetic chemistry.
Natural Prodcast Episode 22 – Alison Narayan
In Natural Prodcast, Alison Narayan on “biocatalysis” her DNA synthesis project with the JGI to explore flavin monooxygenases, and figuring out how to make predictions about the functionality and chemical capabilities of enzymes.
JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt – geNomad
A quick snippet on Antonio Camargo and Simon Roux, a few of the JGI researchers behind software that finds plasmids and viruses within microbial genomes. As mobile genetic elements like viruses spread their DNA, they can affect how microbes cycle nutrients and adapt to climate change.
Natural Prodcast Episode 20 – Brian Bachmann
In Natural Prodcast, guest Brian Bachmann covers genome mining from cave environments, and using biosynthetic engineering and synthetic biology to modify and analog complex natural product molecules.
Natural Prodcast co-hosts Dan Udwary and Jackie Winter chat with Brian Bachmann on genome mining from cave environments, and using biosynthetic engineering and synthetic biology to modify and analog complex natural product molecules
Genome Insider S4 Episode 4: Methane Makers in Yosemite’s Lakes – Mike Beman and Elisabet Perez Coronel
Meet researchers who have hiked, rafted and met local wildlife (a marmot!) as they’ve sampled the microbial communities living in the mountaintop lakes of the Sierra Nevada mountains. These lakes are isolated, but varied. They’re a great way to see how climate change affects freshwater ecosystems, and how those ecosystems work.
Genome Insider S4 Episode 3: A Shrubbier Version of Rubber – Andrew Nelson and Colleen McMahan
Right now, our natural rubber comes from just one tree species: Hevea brasiliensis. It’s great at producing latex that becomes rubber, but it’s vulnerable to disease and climate shifts. So researchers are looking into a desert shrub that’s native to North America: guayule.
Genome Insider S4 Episode 2: The Busy World of Deep Sea Eruptions – Anna-Louise Reysenbach and Emily St. John
The ocean depths are vast and dark. But there are hotspots on the ocean floor — underwater volcanoes and hydrothermal vents — where lively microbial communities thrive, and even support entire ecosystems. Hear from researchers Anna-Louise Reysenbach, Emily St. John, Gilberto Flores, and Peter Girguis about sampling these communities, and understanding how they’ve adapted to this extreme environment.
Genome Insider S4 Episode 1: Crops as Tough as World Cup Turf – James Schnable and Guangchao Sun
In our warming world, we’ll need corn, sorghum and other crops to grow well in worse conditions: with more heat, less water and less fertilizer. Grasses do better in these conditions, so plant biologists James Schnable, Guangchao Sun and Vladimir Torrres have looked into traits that could transfer from grasses into other crops. One grass they studied just happened to be the same species that covered World Cup pitches in 2022.
Natural Prodcast Episode 19 – Bill Fenical
Natural Prodcast guest William Fenical of the Scripps Institution of Oceanography on the beginnings of marine natural products, his experiences in drug discovery, and exploring marine bacteria for novel chemistry.