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September 29, 2016

JGI Safety and Wellness Team Charter

JGI SWELL Team logo

The JGI Safety and Wellness Team is a group of employees who focus on promoting safety and wellness in the workplace and at home. Formerly known as the Safety Culture Group, each member is an advocate of safety and ergonomics and engages in activities that promote healthy living, wellness, and sustainability. As our surrounding environments…

September 26, 2016

Modeling Microbial Networks in an Oxygen Minimum Zone

Collecting sampled waters from Saanich inlet into carboys for large volume filtration of microbial biomass. (Image courtesy of Steven Hallam, UBC)

UBC team develops predictive marine microbiome math model. The Science With help from two DOE national user facilities, a team at the University of British Columbia (UBC) has developed a math model that could help researchers and policy makers track the impact of climate change on the microbial networks that drive the world’s marine ecosystems….

September 15, 2016

The Poplar Genome at 10

Then and now: our poplar tree has grown from less than four feet to more than forty feet in 10 years.

The poplar genome paper has been cited some 1,900 times since its 2006 publication in Science, but that’s not the only way to measure its impact.

September 7, 2016

Microbial dark matter in Science News

“In one of her first projects, Tanja Woyke analyzed the bacterial community huddled inside a worm that lives in the Mediterranean Sea. Woyke, a microbiologist at the U.S. Department of Energy’s Joint Genome Institute in Walnut Creek, Calif., and colleagues published the report in Nature in 2006. It was two years in the making.” Our…

September 7, 2016

How Fungi Help Trees Tolerate Drought

The crosscut shows the fungal tissues - the fungal mantle around the root tip and the the fungal network of tendrils that penetrates the root of plants, or Hartig Net, between Pinus sylvestris plant root cells - in green. (Image by Maira de Freitas Pereira, INRA Nancy.)

Genome of world’s most common fungal symbiont sheds light on drought resistance role The mutualistic relationship between tree roots and ectomycorrhizal (ECM) fungi has been shaping forest ecosystems since their inception. ECM fungi are key players supporting the growth, health and stress tolerance of forest trees globally, such as oak, pine, spruce, birch and beech,…

September 6, 2016

10 New Projects to be Supported Under Joint DOE User Facility Initiative

This diagram from Petr Baldrian’s proposal shows the seasonal differences in the carbon cycle processes in the temperate and boreal coniferous forests. During vegetation seasons, depicted by September on the left, photosynthesis products are allocated to soil via tree roots. When photosynthesis stops in winter, depicted by March on the right, decomposition is the most important carbon cycle process. (Image courtesy of Petr Baldrian)

The U.S. Department of Energy Joint Genome Institute (DOE JGI) and the Environmental Molecular Sciences Laboratory (EMSL) have accepted 10 projects submitted during the 2017 call for proposals for their joint “Facilities Integrating Collaborations for User Science” (FICUS) initiative. These new research projects all involve collaboration between two user facilities that are stewarded by the DOE Office…

September 6, 2016

Microbial Metabolism Impacts Sustainability of Fracking Efforts

This is not one of the wells used in the study, but it shows what a site looks like during the drilling process. (Image courtesy of the MSEEL (Marcellus Shale Energy and Environment Laboratory www.mseel.org), where the Wrighton Lab is also conducting research.)

Team finds surface microbes are colonizing the deep subsurface. The Science Through a collaborative science program involving two DOE national user facilities, DOE-supported researchers have been able to reconstruct microbial genomes for the first time from shale formations that are being drilled to extract natural gas. Coupled with microbial metabolic information, the data shed light…

August 17, 2016

Unveiled: Earth’s Viral Diversity

virome-graphic_art-by-Z-Rostomian-LBNL

Environmental datasets help researchers double the number of microbial phyla known to be infected by viruses. The number of microbes in, on, and around the planet – on the order of a nonillion, or 1030 – is estimated to outnumber the stars in the Milky Way. Microbes are known to play crucial roles in regulating…

August 15, 2016

Expanding the Stable of Workhorse Yeasts

One of the genomes sequenced for this study was of the yeast Scheffersomyces stipitis. (Courtesy of Tom Jeffries, University of Wisconsin-Madison)

New genome sequences target next generation of yeasts with improved biotech uses The yeast Saccharomyces cerevisiae was a part of human civilization before history was recorded. It is essential for making bread, beer and wine, and it is ubiquitous. It is not, however, typical of the more than 1,500 yeast species found around the world….

August 4, 2016

Identifying the Microbial Culprits Initiating Oceanic Nitrogen Loss

In the Nature paper, the team found functional nitrate reductase pathways, shown on the left-hand side of the nitrogen cycle, in SAR11 microbes. (Nitrogen cycle graphic by Zosia Rostomian, Berkeley Lab)

Novel lineages of SAR11 clade reveal adaptations to oxygen-poor ocean zones. The Science Oxygen minimum zones (OMZs) extend over about 8 percent of the oceanic surface area, but account for up to 50 percent of the total loss of bioavailable nitrogen and thus play an important role in regulating the ocean’s productivity by substantially impacting…

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